Cite¶
RAW¶
If you use RAW in your research, please cite the newest RAW paper:
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis. J. B. Hopkins, R. E. Gillilan, and S. Skou. Journal of Applied Crystallography (2017). 50, 1545-1553.
DOI: 10.1107/S1600576717011438
You can also cite the previous RAW paper if you like:
BioXTAS RAW, a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysis. S. S. Nielsen, K. Noergaard Toft, D. Snakenborg, M. G. Jeppesen, J. K. Jacobsen, B. Vestergaard, J. P. Kutteraand L. Arleth. Journal of Applied Crystallography (2009). 42, 959-964.
ATSAS¶
If you use RAW to control any of the ATSAS programs ( AMBIMETER, DAMMIF, DAMMIN, DAMAVER, DAMCLUST, DATCLASS, GNOM, SASRES, SUPCOMB, CIFSUP), in addition to the RAW paper, please cite the appropriate paper given on their documentation pages.
BIFT¶
If you used the BIFT method to determine a P(r) function in RAW, in addition to the RAW paper please cite the following paper:
Bayesian estimation of hyperparameters for indirect Fourier transformation in small-angle scattering. Hansen, S. Journal of Applied Crystallography (2000) 33, 1415-1421.
Evolving Factor Analysis (EFA)¶
If you used the EFA function in RAW to deconvolve overlapping chromatography data, in addition to the RAW paper please cite the following paper:
Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by Crystallography and Chromatography-Coupled Small-Angle X-ray Scattering. S. P. Meisburger, A. B. Taylor, C. A. Khan, S. Zhang, P. F. Fitzpatrick, N. Ando. Journal of the American Chemical Society (2016). 138(20), 6506-6516.
DOI: 10.1021/jacs.6b01563
Electron Density (DENSS)¶
If you used the electron density (DENSS) function in RAW to calculate electron density, in addition to the RAW paper please cite the following paper:
Ab initio electron density determination directly from solution scattering data. T. D. Grant. Nature Methods (2018) 15, 191–193.
DOI: 10.1038/nmeth.4581
REGularized Alternating Least Squares (REGALS)¶
If you used the REGALS function in RAW to deconvolve SAXS data, in addition to the RAW paper please cite the following paper:
REGALS: a general method to deconvolve X-ray scattering data from evolving mixtures S. P. Meisburger, D. Xu, and N. Ando. IUCrJ (2021). 8(2), 225-237.
DOI: 10.1107/S2052252521000555
REGALS source code is available here: https://github.com/ando-lab/regals
Molecular Weight¶
Volume of Correlation¶
If you used the volume of correlation method to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:
Accurate assessment of mass, models and resolution by small-angle scattering. Rambo, R.P. & Tainer, J.A. Nature (2013). 496, 477-481
DOI: 10.1038/nature12070
Corrected Porod Volume¶
If you used the corrected Porod volume method to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:
SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale. V. Piiadov, E. Ares de Araujo, M. Oliveira Neto, A. F. Craievich, and I. Polikarpov. Protein Science (2019). 28(2), 454-473.
DOI: 10.1002/pro.3528
Bayesian Inference¶
If you used the Bayesian inference method (datbayes) to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:
Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data. Hajizadeh, N. R., Franke, D., Jeffries, C. M. & Svergun, D. I. (2018). Sci. Rep. 8, 7204.
Comparison to known structures¶
If you used the comparison to known structures (Shape&Size) method to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:
Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions Franke, D., Jeffries, C. M. & Svergun, D. I. (2018). Biophys. J. 114, 2485–2492.
Baseline Correction¶
If you used the integral baseline correction method in RAW, in addition to the RAW paper please cite the following paper:
US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of pure component patterns from poorly resolved SEC-SAXS data. E. Brookes, P. Vachette, M. Rocco, and J. Pérez. Journal of Applied Crystallography (2016). 49, 1827-1841.