Cite
=========

RAW
----

If you use RAW in your research, please cite the newest RAW paper:

*BioXTAS RAW: improvements to a free open-source program for small-angle X-ray
scattering data reduction and analysis.* J. B. Hopkins, R. E. Gillilan, and S. Skou.
Journal of Applied Crystallography (2017). 50, 1545-1553.

DOI: `10.1107/S1600576717011438 <https://doi.org/10.1107/S1600576717011438>`_


You can also cite the previous RAW paper if you like:

*BioXTAS RAW, a software program for high-throughput automated small-angle X-ray
scattering data reduction and preliminary analysis.* S. S. Nielsen, K. Noergaard
Toft, D. Snakenborg, M. G. Jeppesen, J. K. Jacobsen, B. Vestergaard, J. P.
Kutteraand L. Arleth. Journal of Applied Crystallography (2009). 42, 959-964.

DOI: `10.1107/S0021889809023863 <https://doi.org/10.1107/S0021889809023863>`_


ATSAS
-----

If you use RAW to control any of the ATSAS programs (
`AMBIMETER <https://www.embl-hamburg.de/biosaxs/manuals/ambimeter.html>`_,
`DAMMIF <https://www.embl-hamburg.de/biosaxs/manuals/dammif.html>`_,
`DAMMIN <https://www.embl-hamburg.de/biosaxs/manuals/dammin.html>`_,
`DAMAVER <https://www.embl-hamburg.de/biosaxs/manuals/damaver.html>`_,
`DAMCLUST <https://www.embl-hamburg.de/biosaxs/manuals/damclust.html>`_,
`DATCLASS <https://www.embl-hamburg.de/biosaxs/manuals/datclass.html>`_,
`SASRES <https://www.embl-hamburg.de/biosaxs/manuals/sasres.html>`_,
`SUPCOMB <https://www.embl-hamburg.de/biosaxs/manuals/supcomb.html>`_),
in addition to the RAW paper, please cite the appropriate paper given on their
`documentation pages <https://www.embl-hamburg.de/biosaxs/manuals/>`_.


Evolving Factor Analysis (EFA)
-------------------------------

If you used the EFA function in RAW to deconvolve overlapping chromatography data,
in addition to the RAW paper please cite the following paper:

*Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by
Crystallography and Chromatography-Coupled Small-Angle X-ray Scattering.* S. P.
Meisburger, A. B. Taylor, C. A. Khan, S. Zhang, P. F. Fitzpatrick, N. Ando.
Journal of the American Chemical Society (2016). 138(20), 6506-6516.

DOI: `10.1021/jacs.6b01563 <https://doi.org/10.1021/jacs.6b01563>`_


Electron Density (DENSS)
-------------------------------
DENSS
^^^^^^^^

If you used the electron density (DENSS) function in RAW to calculate electron density,
in addition to the RAW paper please cite the following paper:

*Ab initio electron density determination directly from solution scattering data.*
T. D. Grant. Nature Methods (2018) 15, 191–193.

DOI: `10.1038/nmeth.4581 <https://doi.org/10.1038/nmeth.4581>`_

BIFT
-----------

If you used the BIFT method to determine a P(r) function in RAW, in addition to
the RAW paper please cite the following paper:

*Bayesian estimation of hyperparameters for indirect Fourier transformation in
small-angle scattering.* Hansen, S. Journal of Applied Crystallography (2000)
33, 1415-1421.

DOI: `10.1107/S0021889800012930 <https://doi.org/10.1107/S0021889800012930>`_


Molecular Weight
-------------------------------

Volume of Correlation
^^^^^^^^^^^^^^^^^^^^^^

If you used the volume of correlation method to determine molecular weight in RAW,
in addition to the RAW paper please cite the following paper:

*Accurate assessment of mass, models and resolution by small-angle scattering.* Rambo,
R.P. & Tainer, J.A. Nature (2013). 496, 477-481

DOI: `10.1038/nature12070 <https://doi.org/10.1038/nature12070>`_

Corrected Porod Volume
^^^^^^^^^^^^^^^^^^^^^^^

If you used the corrected Porod volume method to determine molecular weight in RAW,
in addition to the RAW paper please cite the following paper:

*SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute
solution from experimental SAXS data measured on a relative scale.* V. Piiadov,
E. Ares de Araujo, M. Oliveira Neto, A. F. Craievich, and I. Polikarpov.
Protein Science (2019). 28(2), 454-473.

DOI: `10.1002/pro.3528 <https://doi.org/10.1002/pro.3528>`_

Bayesian Inference
^^^^^^^^^^^^^^^^^^^^^

If you used the Bayesian inference method (datbayes) to determine molecular
weight in RAW, in addition to the RAW paper please cite the following paper:

Hajizadeh, N. R., Franke, D., Jeffries, C. M. & Svergun, D. I. (2018).
Sci. Rep. 8, 7204.

DOI: `10.1038/s41598-018-25355-2 <https://doi.org/10.1038/s41598-018-25355-2>`_

Comparison to known structures
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

If you used the comparison to known structures (Shape&Size) method to determine
molecular weight in RAW, in addition to the RAW paper please cite the following
paper:

Franke, D., Jeffries, C. M. & Svergun, D. I. (2018). Biophys. J. 114,
2485–2492.

DOI: `10.1016/j.bpj.2018.04.018 <https://doi.org/10.1016/j.bpj.2018.04.018>`_


Baseline Correction
----------------------

If you used the integral baseline correction method in RAW, in addition to the RAW
paper please cite the following paper:


*US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of
pure component patterns from poorly resolved SEC-SAXS data.* E. Brookes,
P. Vachette, M. Rocco, and J. Pérez. Journal of Applied Crystallography (2016).
49, 1827-1841.

DOI: `10.1107/S1600576716011201 <https://doi.org/10.1107/S1600576716011201>`_