Cite

RAW

If you use RAW in your research, please cite the newest RAW paper:

BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis. J. B. Hopkins, R. E. Gillilan, and S. Skou. Journal of Applied Crystallography (2017). 50, 1545-1553.

DOI: 10.1107/S1600576717011438

You can also cite the previous RAW paper if you like:

BioXTAS RAW, a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysis. S. S. Nielsen, K. Noergaard Toft, D. Snakenborg, M. G. Jeppesen, J. K. Jacobsen, B. Vestergaard, J. P. Kutteraand L. Arleth. Journal of Applied Crystallography (2009). 42, 959-964.

DOI: 10.1107/S0021889809023863

ATSAS

If you use RAW to control any of the ATSAS programs ( AMBIMETER, DAMMIF, DAMMIN, DAMAVER, DAMCLUST, DATCLASS, GNOM, SASRES, SUPCOMB), in addition to the RAW paper, please cite the appropriate paper given on their documentation pages.

BIFT

If you used the BIFT method to determine a P(r) function in RAW, in addition to the RAW paper please cite the following paper:

Bayesian estimation of hyperparameters for indirect Fourier transformation in small-angle scattering. Hansen, S. Journal of Applied Crystallography (2000) 33, 1415-1421.

DOI: 10.1107/S0021889800012930

Evolving Factor Analysis (EFA)

If you used the EFA function in RAW to deconvolve overlapping chromatography data, in addition to the RAW paper please cite the following paper:

Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by Crystallography and Chromatography-Coupled Small-Angle X-ray Scattering. S. P. Meisburger, A. B. Taylor, C. A. Khan, S. Zhang, P. F. Fitzpatrick, N. Ando. Journal of the American Chemical Society (2016). 138(20), 6506-6516.

DOI: 10.1021/jacs.6b01563

Electron Density (DENSS)

DENSS

If you used the electron density (DENSS) function in RAW to calculate electron density, in addition to the RAW paper please cite the following paper:

Ab initio electron density determination directly from solution scattering data. T. D. Grant. Nature Methods (2018) 15, 191–193.

DOI: 10.1038/nmeth.4581

REGularized Alternating Least Squares (REGALS)

If you used the REGALS function in RAW to deconvolve SAXS data, in addition to the RAW paper please cite the following paper:

REGALS: a general method to deconvolve X-ray scattering data from evolving mixtures S. P. Meisburger, D. Xu, and N. Ando. IUCrJ (2021). 8(2), 225-237.

DOI: 10.1107/S2052252521000555

REGALS source code is available here: https://github.com/ando-lab/regals

Molecular Weight

Volume of Correlation

If you used the volume of correlation method to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:

Accurate assessment of mass, models and resolution by small-angle scattering. Rambo, R.P. & Tainer, J.A. Nature (2013). 496, 477-481

DOI: 10.1038/nature12070

Corrected Porod Volume

If you used the corrected Porod volume method to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:

SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale. V. Piiadov, E. Ares de Araujo, M. Oliveira Neto, A. F. Craievich, and I. Polikarpov. Protein Science (2019). 28(2), 454-473.

DOI: 10.1002/pro.3528

Bayesian Inference

If you used the Bayesian inference method (datbayes) to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:

Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data. Hajizadeh, N. R., Franke, D., Jeffries, C. M. & Svergun, D. I. (2018). Sci. Rep. 8, 7204.

DOI: 10.1038/s41598-018-25355-2

Comparison to known structures

If you used the comparison to known structures (Shape&Size) method to determine molecular weight in RAW, in addition to the RAW paper please cite the following paper:

*Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions*Franke, D., Jeffries, C. M. & Svergun, D. I. (2018). Biophys. J. 114, 2485–2492.

DOI: 10.1016/j.bpj.2018.04.018

Baseline Correction

If you used the integral baseline correction method in RAW, in addition to the RAW paper please cite the following paper:

US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of pure component patterns from poorly resolved SEC-SAXS data. E. Brookes, P. Vachette, M. Rocco, and J. Pérez. Journal of Applied Crystallography (2016). 49, 1827-1841.

DOI: 10.1107/S1600576716011201